. Instituto de Biotecnologia UNAM

IBT-UNAM : Dr. Fidel Alejandro Sanchez Flores

Dr. Fidel Alejandro Sanchez Flores

Encargado de la Unidad de Secuenciación Masiva y Bioinformática
Investigador
Grupo del Dr. Lorenzo Patrick Segovia

email: alexsf @ibt.unam.mx
Teléfonos
Oficina +52 (777) 329-1864
desde la CDMX 562-27864
red UNAM 27864

Laboratorio +52 (777) 329-1777 ext 38151.
desde la CDMX 562-27777 ext 38151
red UNAM 38151

- Licenciatura: Investigación Biomédica Básica, IIB-UNAM (2001)
- Doctorado: Ciencias Bioquímicas, IBT-UNAM (2007) con especialidad en Bioinformática
- Estancia de Investigación: Postdoctoral Proyecto del genoma de Taenia solium, UNAM (2007-2008)
- Estancia de Investigación: Postdoctoral Wellcome Trust Sanger Insitute, Cambridge, UK (2009-2011)

Estudiantes

Biol. Jose Santiago Sanchez

Q.B.P. Micheel Vichi

Marcos Chiñas

Marisol Navarro

Q.F.B. Irwing David Vásquez

Publicaciones recientes

Valencia-Morales,M.D.P. Sanchez-Flores,A. Colin-Castelan,D. Alvarado-Caudillo,Y. Fragoso-Bargas,N. Lopez-Gonzalez,G. Pena-Lopez,T. Ramirez-Nava,M. de la Rocha,C. Rodriguez-Rios,D. Lund,G. Zaina,S. 2021. Somatic genetic mosaicism in the apolipoprotein E-null mouse aorta Thrombosis and Haemostasis, Mar 7 Online ahead of print, .

Fajardo-Rebollar,E. Estrada,K. Grande,R. Ek Ramos,M.J. Ruiz-Vargas,G. Villegas-Torres,O.G. Juarez,A. Sanchez-Flores,A. Diaz-Camino,C. 2021. Bacterial and fungal microbiome profiling in chilhuacle negro chili (Capsicum annuum L.) associated with fruit rot disease Plant Disease, Jan 4 [Online ahead of print], .

Escobar-Zepeda,A. Montor,J.J. Olvera,C. Sanchez-Flores,A. Lopez-Munguia,A. 2020. An Extended Taxonomic Profile and Metabolic Potential Analysis of Pulque Microbial Community Using Metagenomics Journal of Food Science & Technology, 5, 83-97.

Mora-Gonzalez,P.C. Espinosa-Luna,G. Ramirez-Higuera,A. Pena-Montes,C. Valerio-Alfaro,G. Sanchez-Flores,A. Quintana-Castro,R. Sanchez-Otero,M.G. Oliart-Ros,R.M. 2020. Metagenomic Approach to Bacterial Diversity and Lipolytic Enzyme's Genes from a Steam Soil of Los Humeros Geothermal Field (Puebla, México) null, , 1-11.

Peralta-Garcia,I. Gonzalez-Munoz,F. Rodriguez-Alegria,M.E. Sanchez-Flores,A. Lopez-Munguia,A. 2020. Evolution of Fructans in Aguamiel (Agave Sap) During the Plant Production Lifetime Frontiers in Nutrition, 7, 566950.

Nabor-Romero,O. Rojas-Martinez,R.I. Ochoa-Martinez,D.L. Vega-Arreguin,J. Sanchez-Flores,F.A. Zavaleta-Mejia,E. 2020. Avances en el conocimiento sobre el rompimiento de la resistencia de chile cm-334 (capsicum annuum l.) A phytophthora capsici por nacobbus aberrans Nematropica, 50, 45-58.

Raggi,L. Garcia-Guevara,F. Godoy-Lozano,E.E. Martinez-Santana,A. Escobar-Zepeda,A. Gutierrez-Rios,R.M. Loza,A. Merino,E. Sanchez-Flores,A. Licea-Navarro,A. Pardo-Lopez,L. Segovia,L. Juarez,K. 2020. Metagenomic Profiling and Microbial Metabolic Potential of Perdido Fold Belt (NW) and Campeche Knolls (SE) in the Gulf of Mexico Frontiers in Microbiology, 11, .

Chincoya,D.A. Sanchez-Flores,A. Estrada,K. Diaz-Velasquez,C.E. Gonzalez-Rodriguez,A. Vaca-Paniagua,F. Davila,P. Arias,S. Solorzano,S. 2020. Identification of High Molecular Variation Loci in Complete Chloroplast Genomes of Mammillaria (Cactaceae, Caryophyllales) Genes (Basel), 11, 830.

Taboada,B. Vazquez-Perez,J.A. Munoz-Medina,J.E. Ramos-Cervantes P. Escalera-Zamudio,M. Boukadida,C. Sanchez-Flores,A. Isa,P. Mendieta-Condado E. Martinez-Orozco,J.A. Becerril-Vargas,E. Salas-Hernandez,J. Grande,R. Gonzalez-Torres,C. Gaytan-Cervantes,F.J. Vazquez,G. Pulido,F. Araiza-Rodriguez A. Garces-Ayala F. Gonzalez-Bonilla,C.R. Grajales-Muniz C. Borja-Aburto,V. Barrera-Badillo G. Lopez,S. Hernandez-Rivas L. Perez-Padilla,R. Lopez-Martinez,I. Avila-Rios,S. Ruiz-Palacios,G. Ramirez-Gonzalez,J.E. Arias,C.F. 2020. Genomic Analysis of Early SARS-CoV-2 Variants Introduced in Mexico Journal of Virology, 94, .

Sanchez-Reyes,A. Breton-Deval,L. Mangelson,H. Sanchez-Flores,A. 2020. Draft genome sequence of "Candidatus Afipia apatlaquensis" sp. nov., IBT-C3, a potential strain for decolorization of textile dyes BMC Research Notes, 13, 265.

Breton-Deval,L. Sanchez-Reyes,A. Sanchez-Flores,A. Juarez,K. Salinas-Peralta,I. Mussali-Galante,P. 2020. Functional Analysis of a Polluted River Microbiome Reveals a Metabolic Potential for Bioremediation Microorganisms, 8, 554.

Hernandez-Valle,J. Sanchez-Flores,A. Poggio,S. Dreyfus,G. Camarena,L. 2020. The CtrA regulon of Rhodobacter sphaeroides favors adaptation to a particular life style Journal of Bacteriology, 202, 00678-19.

Solorzano,S. Chincoya,D.A. Sanchez-Flores,A. Estrada,K. Diaz-Velasquez,C.E. Gonzalez-Rodriguez,A. Vaca-Paniagua,F. Davila,P. Arias,S. 2019. De Novo Assembly Discovered Novel Structures in Genome of Plastids and Revealed Divergent Inverted Repeats in Mammillaria (Cactaceae, Caryophyllales) Plants (Basel), 8, 392.

Breton-Deval,L. Sanchez-Flores,A. Juarez,K. Vera-Estrella,R. 2019. Integrative study of microbial community dynamics and water quality along The Apatlaco River Environmental Pollution, 255, 113158.

Gonzalez,L.M. Estrada,K. Grande,R. Jimenez-Jacinto,V. Vega-Alvarado,L. Sevilla,E. Barrera,J. Cuesta,I. Zaballos,A. Bautista,J.M. Lobo,C.A. Sanchez-Flores,A. Montero,E. 2019. Comparative and functional genomics of the protozoan parasite Babesia divergens highlighting the invasion and egress processes PLoS Neglected Tropical Diseases, 13, e0007680.

Jimenez-Jacinto,V. Sanchez-Flores,A. Vega-Alvarado,L. 2019. Integrative Differential Expression Analysis for Multiple EXperiments (IDEAMEX): A Web Server Tool for Integrated RNA-Seq Data Analysis Frontiers in Genetics, 10, 279.

Garcia-Lopez,G. Avila-Gonzalez,D. Garcia-Castro,I.L. Flores-Herrera,H. Molina-Hernandez,A. Portillo,W. Diaz-Martinez,N.E. Sanchez-Flores,A. Verleyen,J. Merchant-Larios,H. Diaz,N.F. 2019. Pluripotency markers in tissue and cultivated cells in vitro of different regions of human amniotic epithelium Experimental Cell Research, 375, 31-41.

Munoz-Medina,J.E. Garcia-Knight,M.A. Sanchez-Flores,A. Monroy-Munoz,I.E. Grande,R. Esbjornsson,J. Santacruz-Tinoco,C.E. Gonzalez-Bonilla,C.R. 2018. Evolutionary analysis of the Chikungunya virus epidemic in Mexico reveals intra-host mutational hotspots in the E1 protein PLoS ONE, 13, e0209292.

Godoy-Lozano,E.E. Escobar-Zepeda,A. Raggi,L. Merino,E. Gutierrez-Rios,R.M. Juarez,K. Segovia,L. Licea-Navarro,A.F. Gracia,A. Sanchez-Flores,A. Pardo-Lopez,L. 2018. Bacterial diversity and the geochemical landscape in the southwestern Gulf of Mexico Frontiers in Microbiology, 9, 2528.

Barreto-Curiel,F. Ramirez-Puebla,S.T. Ringo,E. Escobar-Zepeda,A. Godoy-Lozano,E. Vazquez-Duhalt,R. Sanchez-Flores,A. Viana,M.T. 2018. Effects of extruded aquafeed on growth performance and gut microbiome of juvenile Totoaba macdonaldi Animal Feed Science and Technology, 245, 91-103.

Garcia-Maldonado,J.Q. Escobar-Zepeda,A. Raggi,L. Bebout,B.M. Sanchez-Flores,A. Lopez-Cortes,A. 2018. Bacterial and archaeal profiling of hypersaline microbial mats and endoevaporites, under natural conditions and methanogenic microcosm experiments Extremophiles, 22, 903-916.

Escobar-Zepeda,A. Godoy-Lozano,E.E. Raggi,L. Segovia,L. Merino,E. Gutierrez-Rios,R.M. Juarez,K. Licea-Navarro,A.F. Pardo-Lopez,L. Sanchez-Flores,A. 2018. Analysis of sequencing strategies and tools for taxonomic annotation: Defining standards for progressive metagenomics Scientific Reports, 8, 12034 [correction 10(1) 4259].

Sanchez-Pozos,K. Ortiz-Lopez,M.G. Pena-Espinoza,B.I. Granados-Silvestre,M.A. Jimenez-Jacinto,V. Verleyen,J. Tekola-Ayele,F. Sanchez-Flores,A. Menjivar,M. 2018. Whole-exome sequencing in maya indigenous families: variant in PPP1R3A is associated with type 2 diabetes Molecular Genetics and Genomics, 293, 1205-1216.

Contreras-Castro,L. Maldonado,L.A. Quintana,E.T. Raggi,L. Sanchez-Flores,A. 2018. Draft Genome Sequence of Two Marine Plantactinospora spp. from the Gulf of California Microbiology Resource Announcements, 6, UNSP e00436-18.

Olvera-Garcia,M. Sanchez-Flores,A. Quirasco,B.M. 2018. Genomic and functional characterisation of two Enterococcus strains isolated from Cotija cheese and their potential role in ripening Applied Microbiology and Biotechnology, 102, 2251-2267.

Carrillo-Tapia,E. Garcia-Garcia,E. Herrera-Gonzalez,N.E. Yamazaki-Nakashimada,M.A. Staines-Boone,A.T. Segura-Mendez,N.H. Scheffler-Mendoza,S.C. Farrill-Romanillos,O. Gonzalez-Serrano,M.E. Rodriguez-Alba,J.C. Santos-Argumedo,L. Berron-Ruiz,L. Sanchez-Flores,A. Lopez-Herrera,G. 2018. Delayed diagnosis in X-linked agammaglobulinemia and its relationship to the occurrence of mutations in BTK non-kinase domains Expert Review of Clinical Immunology, 14, 83-93.

Garcia,C.F. Pedrini,N. Sanchez-Paz,A. Reyna-Blanco,C.S. Lavarias,S. Muhlia-Almazan,A. Fernandez-Gimenez,A. Laino,A. de-la-Re-Vega,E. Lukaszewicz,G. Lopez-Zavala,A.A. Brieba,L.G. Criscitello,M.F. Carrasco-Miranda,J.S. Garcia-Orozco,K.D. Ochoa-Leyva,A. Rudino-Pinera,E. Sanchez-Flores,A. Sotelo-Mundo,R.R. 2018. De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus: Implications for a detoxification response Marine Genomics, 37, 74-81.

Titulaer,M. Melgoza-Castillo,A. Panjabi,A.O. Sanchez-Flores,A. Martinez-Guerrero,J.H. Macias-Duarte,A. Fernandez,J.A. 2017. Molecular analysis of stomach contents reveals important grass seeds in the winter diet of Baird's and Grasshopper sparrows, two declining grassland bird species PLoS ONE, 12, e0189695.

Olvera,A. Martyniuk,C.J. Buisine,N. Jimenez-Jacinto,V. Sanchez-Flores,A. Sachs,L.M. Orozco,A. 2017. Differential transcriptome regulation by 3,5-T2 and 3',3,5-T3 in brain and liver uncovers novel roles for thyroid hormones in tilapia Scientific Reports, 7, 15043.

Ortiz-Berrocal,M. Lozano,L. Sanchez-Flores,A. Nava,N. Hernandez,G. Reddy,P.M. 2017. Expression in rice of an autoactive variant of Medicago truncatula DMI3, the Ca+2/calmodulin-dependent protein kinase from the common symbiotic pathway modifies root transcriptome and improves mycorrhizal colonization Plant Biotechnology Reports, 11, 271-287.

Sandoval-Azuara,S.E. Perea-Jacobo,R. Muniz-Salazar,R. Robbe-Austerman,S. Perera-Ortiz,A. Lopez-Valencia,G. Bravo,D.M. Sanchez-Flores,A. Miranda-Guzman,D. Flores-Lopez,C.A. Zenteno-Cuevas,R. Laniado-Laborin,R. Lafarga de la,C.F. Stuber,T.P. 2017. Whole genome sequencing of Mycobacterium bovis to obtain molecular fingerprints in human and cattle isolates from Baja California, Mexico International Journal of Infectious Diseases, 63, 48-56.

Rodriguez-Anaya,L.Z. Ibarra-Gamez,J.C. Lares-Villa,F. Casillas-Hernandez,R. Sanchez-Flores,A. Gonzalez-Galaviz,J.R. 2016. Analysis of repeated compound units in ORF94 of white spot syndrome virus isolated from Litopenaeus vannamei from outbreak and non-outbreak shrimp farms in Sonora, Mexico Latin American Journal of Aquatic Research, 44, 850-854.

Ramirez-Puebla,S.T. Ormeno-Orrillo,E. Vera-Ponce de Leon A. Lozano,L. Sanchez-Flores,A. Rosenblueth,M. Martinez-Romero,E. 2016. Genomes of Candidatus Wolbachia bourtzisii wDacA and Candidatus Wolbachia pipientis wDacB from the Cochineal Insect Dactylopius coccus (Hemiptera: Dactylopiidae) G3: Genes, Genomes, Genetics, 6, 3343-3349.

Sanchez-Flores,A. Penazola,F. Carpinteyro-Ponce,J. Nazario-Yepiz,N. Abreu-Goodger,C. Machado,C.A. Markow,T.A. 2016. Genome Evolution in Three Species of Cactophilic Drosophila G3: Genes, Genomes, Genetics, 6, 3097-3105.

Vera-Ponce De Leon,A. Sanchez-Flores,A. Rosenblueth,M. Martinez-Romero,E. 2016. Fungal Community Associated with Dactylopius (Hemiptera: Coccoidea: Dactylopiidae) and Its Role in Uric Acid Metabolism Frontiers in Microbiology, 7, 954.

Bedoya-Lopez,A. Estrada,K. Sanchez-Flores,A. Ramirez,O.T. Altamirano,C. Segovia,L. Miranda-Rios,J. Trujillo-Roldan,M.A. Valdez-Cruz,N.A. 2016. Effect of Temperature Downshift on the Transcriptomic Responses of Chinese Hamster Ovary Cells Using Recombinant Human Tissue Plasminogen Activator Production Culture PLoS ONE, 11, e0151529.

Escobar-Zepeda,A. Sanchez-Flores,A. Quirasco Baruch,M. 2016. Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota Food Microbiology, 57, 116-127.

Rodriguez-Anaya,L.Z. Gonzalez-Galaviz,J.R. Casillas-Hernandez,R. Lares-Villa,F. Estrada,K. Ibarra-Gamez,J.C. Sanchez-Flores,A. 2016. Draft Genome Sequence of White Spot Syndrome Virus Isolated from Cultured Litopenaeus vannamei in Mexico Genome Announcements, 4, .

Hunt,V.L. Tsai,I.J. Coghlan,A. Reid,A.J. Holroyd,N. Foth,B.J. Tracey,A. Cotton,J.A. Stanley,E.J. Beasley,H. Bennett,H.M. Brooks,K. Harsha,B. Kajitani,R. Kulkarni,A. Harbecke,D. Nagayasu,E. Nichol,S. Ogura,Y. Quail,M.A. Randle,N. Xia,D. Brattig,N.W. Soblik,H. Ribeiro,D.M. Sanchez-Flores,A. Hayashi,T. Itoh,T. Denver,D.R. Grant,W. Stoltzfus,J.D. Lok,J.B. Murayama,H. Wastling,J. Streit,A. Kikuchi,T. Viney,M. Berriman,M. 2016. The genomic basis of parasitism in the Strongyloides clade of nematodes Nature Genetics, 48, 299-307.

Escobar-Zepeda,A. Vera-Ponce De Leon,A. Sanchez-Flores,A. 2015. The road to metagenomics: from microbiology to DNA sequencing technologies and bioinformatics Frontiers in Genetics, 6, .

Olvera-Garcia,M. Fontes-Perez,H. Chavez-Martinez,A. Ruiz-Barrera O. Rodriguez-Almeida,F.A. Sanchez-Flores,A. Corral-Luna,A. 2015. Draft Genome Sequences for Five Strains of Trabulsiella odontotermitis, Isolated from Heterotermes sp. Termite Gut Genome Announcements, 3, art. no. e0128915.

Fontes-Perez,H. Olvera-Garcia,M. Chavez-Martinez,A. Rodriguez-Almeida,F.A. Arzola-Alvarez,C.A. Sanchez-Flores,A. Corral-Luna,A. 2015. Genome Sequence of Citrobacter sp. CtB7.12, Isolated from the Gut of the Desert Subterranean Termite Heterotermes aureus Genome Announcements, 3, art. no. e0129015.

Velez,P. Alejandri-Ramirez,N.D. Gonzalez,M.C. Estrada,K.J. Sanchez-Flores,A. Dinkova,T.D. 2015. Comparative Transcriptome Analysis of the Cosmopolitan Marine Fungus Corollospora maritima Under Two Physiological Conditions G3: Genes, Genomes, Genetics, 5, 1805-1814.

Gomez-Angulo,J. Vega-Alvarado,L. Escalante-Garcia,Z. Grande,R. Gschaedler-Mathis,A. Amaya-Delgado,L. Arrizon,J. Sanchez-Flores,A. 2015. Genome Sequence of Torulaspora delbrueckii NRRL Y-50541, Isolated from Mezcal Fermentation Genome Announcements, 3, .

Calva,E. Silva,C. Zaidi,M.B. Sanchez-Flores,A. Estrada,K. Silva,G.G. Soto-Jimenez,L.M. Wiesner,M. Fernandez-Mora,M. Edwards,R.A. Vinuesa,P. 2015. Complete Genome Sequencing of a Multidrug-Resistant and Human-Invasive Salmonella enterica Serovar Typhimurium Strain of the Emerging Sequence Type 213 Genotype Genome Announcements, 3, e00663-15.

Vega-Alvarado,L. Gomez-Angulo,J. Escalante-Garcia,Z. Grande,R. Gschaedler-Mathis,A. Amaya-Delgado,L. Sanchez-Flores,A. Arrizon,J. 2015. High-Quality Draft Genome Sequence of Candida apicola NRRL Y-50540 Genome Announcements, 3, [correction en vol 3 (4) 2015].

Valencia-Morales,M.P. Zaina,S. Heyn,H. Carmona,F.J. Varol,N. Sayols,S. Condom,E. Ramirez-Ruz,J. Gomez,A. Moran,S. Lund,G. Rodriguez-Rios,D. Lopez-Gonzalez,G. Ramirez-Nava,M. de la Rocha,C. Sanchez-Flores,A. Esteller,M. 2015. The DNA methylation drift of the atherosclerotic aorta increases with lesion progression BMC Medical Genomics, 8, 85.

Dautt-Castro,M. Ochoa-Leyva,A. Contreras-Vergara,C.A. Pacheco-Sanchez,M.A. Casas-Flores,S. Sanchez-Flores,A. Kuhn,D.N. Islas-Osuna,M.A. 2015. Mango (Mangifera indica L.) cv. Kent fruit mesocarp de novo transcriptome assembly identifies gene families important for ripening Frontiers in Plant Science, 6, .

Glover,L. Alsford,S. Baker,N. Turner,D.J. Sanchez-Flores,A. Hutchinson,S. Hertz-Fowler,C. Berriman,M. Horn,D. 2015. Genome-scale RNAi screens for high-throughput phenotyping in bloodstream-form African trypanosomes Nature Protocols, 10, 106-133.

Ghaffari,N. Sanchez-Flores,A. Doan,R. Garcia-Orozco,K.D. Chen,P.L. Ochoa-Leyva,A. Lopez-Zavala,A.A. Carrasco,J.S. Hong,C. Brieba,L.G. Rudino-Pinera,E. Blood,P.D. Sawyer,J.E. Johnson,C.D. Dindot,S.V. Sotelo-Mundo,R.R. Criscitiello,M.F. 2014. Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture Scientific Reports, 4, 7081.

Cuesta,I. Gonzalez,L.M. Estrada,K. Grande,R. Zaballos,A. Lobo,C.A. Barrera,J. Sanchez-Flores,A. Montero,E. 2014. High-Quality Draft Genome Sequence of Babesia divergens, the Etiological Agent of Cattle and Human Babesiosis Genome Announcements, 2, .

Reid,A.J. Blake,D.P. Ansari,H.R. Billington,K. Browne,H.P. Bryant,J.M. Dunn,M. Hung,S.S. Kawahara,F. Miranda-Saavedra,D. Malas,T. Mourier,T. Naghra,H. Nair,M. Otto,T.D. Rawlings,N.D. Rivailler,P. Sanchez-Flores,A. Sanders,M. Subramaniam,C. Tay,Y.L. Woo,Y. Wu,X. Barrell,B. Dear,P.H. Doerig,C. Gruber,A. Ivens,A.C. Parkinson,J. Rajandream,M.A. Shirley,M.W. Wan,K.L. Berriman,M. Tomley,F.M. Pain,A. 2014. Genomic analysis of the causative agents of coccidiosis in domestic chickens Genome Research, 24, 1676-1685.

Sotillo,J. Sanchez-Flores,A. Cantacessi,C. Harcus,Y. Pickering,D. Bouchery,T. Camberis,M. Tang,S.C. Giacomin,P. Mulvenna,J. Mitreva,M. Berriman,M. LeGros,G. Maizels,R.M. Loukas,A. 2014. Secreted proteomes of different developmental stages of the gastrointestinal nematode Nippostrongylus brasiliensis Molecular and Cellular Proteomics, 13, 2736-2751 * .

Oliveira,P.D. Lima,F.M. Cruz,M.C. Ferreira,R.C. Sanchez-Flores,A. Cordero,E.M. Cortez,D.R. Ferreira,E.R. Briones,M.R. Mortara,R.A. Silveira,J.F. Bahia,D. 2014. Trypanosoma cruzi: Genome characterization of phosphatidylinositol kinase gene family (PIK and PIK-related) and identification of a novel PIK gene Infection, Genetics and Evolution, 25, 157-165.

Sanchez-Flores,A. Abreu-Goodger,C. 2014. A Practical Guide to Sequencing Genomes and Transcriptomes Current Topics in Medicinal Chemistry, 14, 398-406.

Soto-Jimenez,L.M. Estrada,K. Berriman,M. Sanchez-Flores,A. 2014. GARM: Genome Assembly, Reconciliation and Merging pipeline Current Topics in Medicinal Chemistry, 14, 418-424.

Tsai,I.J. Zarowiecki,M. Holroyd,N. Garciarrubio,A. Sanchez-Flores,A. Brooks,K.L. Tracey,A. Bobes,R.J. Fragoso,G. Sciutto,E. Aslett,M. Beasley,H. Bennett,H.M. Cai,J. Camicia,F. Clark,R. Cucher,M. De Silva,N. Day,T.A. Deplazes,P. Estrada,K. Fernandez,C. Holland,P.W.H. Hou,J. Hu,S. Huckvale,T. Hung,S.S. Kamenetzky,L. Keane,J.A. Kiss,F. Koziol,U. Lambert,O. Liu,K. Luo,X. Luo,Y. Macchiaroli,N. Nichol,S. Paps,J. Parkinson,J. Pouchkina-Stantcheva,N. Riddiford,N. Rosenzvit,M. Salinas,G. Wasmuth,J.D. Zamanian,M. Zheng,Y. Cai,X. Soberon,X. Olson,P.D. Laclette,J.P. Brehm,K. Berriman,M. Ochoa-Leyva,A. 2013. The genomes of four tapeworm species reveal adaptations to parasitism Nature, 496, 57-63.

Sanchez-Flores,A. 2013. Setting the foundation for helminths systems biology: Sequencing technologies, methodologies and applications Systems Biomedicine, 1, 5-11.

Holroyd,N. Sanchez-Flores,A. 2012. Producing parasitic helminth reference and draft genomes at the Wellcome Trust Sanger Institute Parasite Immunology, 34, 100-107 * .

Sanchez-Flores,A. 2012. Sequencing parasite populations Nature Reviews Microbiology, 10, 85 * .

Alsford,S. Eckert,S. Baker,N. Glover,L. Sanchez-Flores,A. Leung,K.F. Turner,D.J. Field,M.C. Berriman,M. Horn,D. 2012. High-throughput decoding of antitrypanosomal drug efficacy and resistance Nature, 482, 232-236 * .

Sanchez-Flores,A. 2011. A 'clap' for in silico studies Nature Reviews Microbiology, 9, 7 * .

Alsford,S. Turner,D.J. Obado,S.O. Sanchez-Flores,A. Glover,L. Berriman,M. Hertz-Fowler,C. Horn,D. 2011. High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Research, 21, 915-924 * .

Kikuchi,T. Cotton,J.A. Dalzell,J.J. Hasegawa,K. Kanzaki,N. McVeigh,P. Takanashi,T. Tsai,I.J. Assefa,S.A. Cock,P.J. Otto,T.D. Hunt,M. Reid,A.J. Sanchez-Flores,A. Tsuchihara,K. Yokoi,T. Larsson,M.C. Miwa,J. Maule,A.G. Sahashi,N. Jones,J.T. Berriman,M. 2011. Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus PLoS Pathogens, 7, e1002219 * .

Sanchez-Flores,A. 2011. A new piece of the eukaryotic puzzle Nature Reviews Microbiology, 9, 769 * .

Sanchez-Flores,A. Perez-Rueda,E. Segovia,L. 2008. Protein homology detection and fold inference through multiple alignment entropy profiles Proteins, 70, 248-256.

Libros y capítulos recientes

Nabor-Romero,O. Rojas-Martinez,R.I. Zavaleta-Mejia,E. Ochoa-Martinez,D.L. Sanchez-Flores,F.A. Vega-Arreguin,J. 2018. Análisis del transcriptoma de chile cm-334 en el rompimiento de resistencia a Phytophthora capsici por Nacobbus aberrans en: Memoria del Simposio Avances de Investigación Posgrado en Fitosanidad Colegio de Postgraduados 22 agosto 2018. pags. 89-94

Sanchez-Flores,F. 2016. Secuenciacion masiva en la era genomica en: Ramirez-Bello,J. Genómica estructural y funcional en las enfermedades multifactoriales. UNAM.

Otras Publicaciones

Velasquez,L.F. Canton,P.E. Sanchez-Flores,A. Bravo,A. Ceron,J. 2020. De novo transcriptome assembly of Premnotrypes vorax (Coleoptera: Curculionidae) Research Square, Preprint posted 17 Jan, .

Valderrama-Blanco,M.B. Sanchez-Flores,F.A. Burguete-Garcia,A.I. Orozco-Nunez,E. 2020. La colaboración Academia-Gobierno como un elemento importante para la atención temprana de la pandemia de COVID-19 en Cuernavaca Biotecnología en Movimiento.Revista de divulgación del Instituto de Biotecnología de la UNAM, 22, 18-22.

Sanchez-Reyes,A. Breton-Deval,L.M. Mangelson,H. Salinas-Peralta,I. Sanchez-Flores,A. 2020. Hi-C deconvolution of a textile-dye degrader microbiome reveals novel taxonomic landscapes and link phenotypic potential to individual genomes bioRxiv, Preprint posted June 18, 2020.

Taboada,B. Vazquez-Perez,J.A. Munoz-Medina,J.E. Ramos-Cervantes,P. Escalera-Zamudio,M. Boukadida,C. Sanchez-Flores,A. Isa,P. Mendieta-Condado,E. Martinez-Orozco,J.A. Becerril-Vargas,E. Salas-Hernandez,J. Grande,R. Gonzalez-Torres,C. Gaytan-Cervantes,F.J. Vazquez,G. Pulido,F. Araiza-Rodriguez,A. Garces-Ayala,F. Gonzalez-Bonilla,C.R. Grajales-Muniz,C. Borja-Aburto,V.H. Barrera-Badillo,G. Lopez,S. Hernandez-Rivas,L. Perez-Padilla,R. Lopez Martinez,I. Avila-Rios,S. Ruiz-Palacios,G. Ramirez-Gonzalez,J.E. Arias,C.F. 2020. Genomic analysis of early SARS-CoV-2 strains introduced in Mexico bioRxiv, Preprint posted May 30, 120402.

Breton-Deval,L. Sanchez-Reyes,A. Sanchez-Flores,A. Juarez,K. Mussali-Galante,P. 2019. One step towards bioremediating a heavily polluted river: Metagenomic insights on the function of microbial community bioRxiv, Preprint posted June 21, 2019, 675876.

Breton-Deval,L. Juarez,K. Sanchez-Flores,A. Vera-Estrella,R. 2019. Water quality assessments and metagenomic analysis of the polluted river Apatlaco, Mexico bioRxiv, Preprint 21 January 2019, 536128.

Jimenez-Jacinto,V. Escobar-Zepeda,A. Godoy,E. Vega-Alvarado,L. Verleyen,J. Estrada,K. Sanchez-Flores,A. 2017. El metagenoma del taco Biotecnología en Movimiento.Revista de divulgación del Instituto de Biotecnología de la UNAM, 8, 29-32.

Sanchez-Flores,A. 2015. Unidad de Secuenciación Masiva y Bioinformática, a la vanguardia de la ciencia Biotecnología en Movimiento.Revista de divulgación del Instituto de Biotecnología de la UNAM, 2, 23-24.

Sanchez-Flores,A. 2015. Las nuevas tecnologías y el cómputo nos ayudan a estudiar detalladamente a los patógenos Biotecnología en Movimiento.Revista de divulgación del Instituto de Biotecnología de la UNAM, 2, 3-4.

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